Everyday Erinyes #246

 Posted by at 10:02 am  Politics
Dec 262020
 

Experts in autocracies have pointed out that it is, unfortunately, easy to slip into normalizing the tyrant, hence it is important to hang on to outrage. These incidents which seem to call for the efforts of the Greek Furies (Erinyes) to come and deal with them will, I hope, help with that. As a reminder, though no one really knows how many there were supposed to be, the three names we have are Alecto, Megaera, and Tisiphone. These roughly translate as “unceasing,” “grudging,” and “vengeful destruction.”

I would like to be thinking about more pleasant things on the day after Christmas, but events don’t really give me a choice. This is far too important to ignore or even delay.
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Why it matters that the coronavirus is changing – and what this means for vaccine effectiveness

The French government will not accept any passengers arriving from the U.K. amid fears over the new mutant coronavirus strain.
Steve Parsons/PA Images via Getty Images

David Kennedy, Penn State

A new variant of SARS-CoV-2 is spreading rapidly in the United Kingdom, with over 1,400 cases since September. SARS-CoV-2, the virus that causes COVID-19, generally accumulates mutations slowly over time, but this new variant had accumulated many mutations quickly.

If this new version of the virus is here to stay, as it appears to be, what does that mean? Will this new version of the virus replace the old one? Will it be easier to catch? And, most important, will the current vaccines still be effective?

This interests me because I am an evolutionary microbiologist who studies the link between the transmission and evolution of infectious diseases. In particular, I spend a lot of time considering the effects of vaccines on pathogen evolution and the effects of pathogen evolution on the impact of vaccines.

What is the new SARS-CoV-2 mutant that has emerged?

As the spike proteins on the surface the SARS-CoV-2 virus mutate the shape changes, which may affect the ability of the coronavirus to infect cells.
Tharun15/iStock via Getty Images Plus

The new version of SARS-CoV-2 – named the B.1.1.7 lineage – is spreading in the U.K. and possibly beyond. The differences between the old and new virus include 23 mutations in the virus’s genetic code that have altered four viral proteins.

Eight of these 23 mutations affect the spike protein. This matters because the spike protein enables the virus to enter human cells, and it is a key target of our immune response, both in fighting off the virus during infection and in protecting us from disease following vaccination with the Pfizer and Moderna vaccines.

If the changes to the spike protein help the virus enter human cells more easily, then the virus could be transmitted from person to person more readily.

These mutations may also alter how well the host’s immune system combats the virus, potentially reducing the efficacy of the current vaccines.

What is different about this new version of SARS-CoV-2?

Samples of the new virus isolated from patients suggest that this variant has been increasing in relative frequency over the past three months.

The increase in frequency is concerning, as it suggests – but does not prove – that the B.1.1.7 isolates of SARS-CoV-2 are more transmissible than the original virus. Some have estimated that the new virus may be up to 70% more transmissible than the old virus. While these estimates are consistent with the data, it is entirely too early to make a definitive conclusion.

If this increase in transmissibility is confirmed, it might be due to of the mutations in the spike protein allows it to bind more tightly to the ACE2 receptor, which provides a gateway for the virus to enter human cells.

But it might also be due to any of the other changes to the virus.

Is it more dangerous? If so, why?

If the new version, B.1.1.7, is indeed more transmissible than the old virus, it will be more dangerous in the sense that it will make more people sick.

However, I am not aware of good evidence that there is any difference in severity of disease caused by the new version of this virus compared with the older one. That said, with so few known cases, it may still be too early to say.

Will the Pfizer and Moderna vaccines still be effective against this new strain?

Both the Pfizer and Moderna vaccines work by training our immune systems to recognize a specific version of the viral spike protein. The version of the spike protein used by the vaccines was designed to match that of the old virus, not that of the B.1.1.7 virus. This means that the vaccines might become less effective than expected should this new virus spread widely.

Vaccine-virus mismatch is an ongoing challenge for scientists charged with developing the seasonal flu vaccine. But even with a virus-vaccine mismatch, the flu vaccine reduces the likelihood, and the severity, of disease.

The question is therefore not whether the vaccines will be effective, but rather how effective they will be. The severity of the mismatch matters, but the only way to determine its impact in this case is through scientific study, and to my knowledge, no data on that has yet been collected. In other words, it’s too early to say whether and how this new variant will influence the overall effectiveness of the Pfizer and Moderna vaccines.

Should people still get the new mRNA vaccine?

The appearance of this new B.1.1.7 makes it even more important that people get vaccinated as soon as possible.

If this new version is more transmissible, or if the vaccine is less effective because of a virus-vaccine mismatch, more people will need to be vaccinated to achieve herd immunity and get this disease under control.

Moreover, we now have proof that the spike protein of SARS-CoV-2 can change drastically in a short time, and so it is critical that we get the virus under control to prevent it from evolving further and completely undermining vaccination efforts.The Conversation

David Kennedy, Assistant Professor of Biology, Penn State

This article is republished from The Conversation under a Creative Commons license. Read the original article.

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Alecto, Megaera, and Tisiphone, for myself, I was already inclined to wait (even though I am somewhat high risk) for the vaccination until more is known. This news only strengthens that inclination. On the other hand, if the virus mutates as quickly as all this suggests, one might conceivably wait forever.

Everyone here is aware I have allergy concerns with this (or any) vaccine – I certainly make no secret of it, and have addressed it on other sites as well.  During the week I actually got a response from someone (whose credentials I don’t know, but you’ll see that doesn’t matter)  who provided links to the exact documents at the FDA which have that information.  (I guess if a wheel squeaks for long enough, it will eventually get greased.  Eventually.)  In any case, here they are:  Pfizer and Moderna.  The actual component are on page two of each PDF, about the middle of the page.  Furies and readers alike, feel free to share it widely.

The Furies and I will be back.

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  13 Responses to “Everyday Erinyes #246”

  1. This is a very thorough assessment, it seems.  I saw it at “The Conversation” the other day.
    Allergic reactions can be mortally dangerous.  There is a TV ad for a medicine, that lists possible side effects, among which is anaphylaxis, which they fail to mention can easily kill someone. 

  2. Thanks for this illuminating explanation Joanne.  Article indicate that at least one who returned to France from the UK is infected with and that it has been found in Japan.  Elsewhere South Africa and Nigeria have also identified new strains.
    I agree that it is important for every possible person to get a vaccine as soon as it becomes available to them.

  3. Thank you,well written and accurately informative…..

  4. What if the two variations of the virus meet, and exchange DNA so we get a strain that combines the deadliness of one and the contagiousness of the other? Could that happen? I’m no virus expert, so I don’t know whether this is possible. Just what we need, an even nastier Coronavirus.

  5. Most informative, interesting and scary! 

    Thanks, Joanne for this information
    and w/be passing this on in my circle. 

  6. Wow…truly appreciate the information you posted about the new variety Covid-19 virus that’s out there now.
    Listening every night to the nightly news, hearing them speak of how it’s spreading so rapidly scares the heck out of me.
    I wish our leaders would do like London and order a full lockdown to get it under some sort of control. 
    Will be happy when they get us all vaccinated, but with the way they’re speaking, we have a few months to go.
    Thanks again Joanne.

  7. Excellent article with a clear explanation. Thanks, Joanne.

    Unless there are known reasons to avoid vaccination, such as allergies, it seems advisable to get vaccinated as soon as it is offered while staying vigilant and keeping transmission as low as possible.

    No vaccine will be 100% effective and none will be effective against all possible mutations but should all protective measures like distancing, masks and diligent handwashing fail, it should help to make you less sick and survive it.

  8. Thanks JD, That’s good info.  Would you foll this and keep us posted? 35

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